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I've been getting this same behavior for the past few weeks as well and its the only thing I don't like about sublime text. All I can think of is that this is perhaps due to one of the plugins I have installed, since I don't remember it happening at the very onset. Now to go back through dozens of plugins and see which one causes the issue? This behavior also happens on Cmd-X as well. Its like it doesn't see that first keystroke.